rs52035473 SNP Detail

Summary

• ID
  rs52035473
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:25113771 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTGCCAGC CAGCTCACGA
  GGGAGGGGAG CGTTTATTTC TGAAACTTGC ACTCTTAGAG GTGTTATTTC ATGGCCTGTC
  TGCCCTGTCA TTTTTGAGCC TGTGCTGAGA TACATCATGG AGAGAGTGCA TAGTGGAGGA
  AACTGCTCAC TTCTCGCATC TAGGAAGCAA AGAAGATAGC AAGAACCATA AACCTAATAG
  Y
  TCATTTAAGG GTGTATACGC CACCATGACA TAACTGTTTT CTACTGAACT CTGTCTCCTA
  AAGGTTCTTC TGATCTCCCA CAGACTGGCT ACCCAGCCTT TACCTCATGG GCCTTTGGGA
  AGCACTGAAG ATCTAAATTA TAACAATCTT GGAACATCAG CACTGAATTT GGTGTCTATT
  TGAGGGACTT TAAGACTGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60980603	NES16142451	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T		C	C	T	C		C
ss322121700	CHEV_7_26199365	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs52035473					SNP	T	T	T	T	T	T	T	T	T	T	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60980603	NES16142451	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:25113771 () rs orientation: forward

Symbol	Name	Function Class
4732471J01Rik	RIKEN cDNA 4732471J01 gene	within coordinates
Cxcl17	C-X-C motif chemokine ligand 17	1460 bp upstream
Rr164493	regulatory region 164493	271 bp distal
Rr170193	regulatory region 170193	772 bp distal
Tssr2143	transcription start site region 2143	1544 bp upstream
Tssr2144	transcription start site region 2144	1396 bp upstream
Tssr2145	transcription start site region 2145	1372 bp upstream
Tssr2146	transcription start site region 2146	1359 bp upstream
Tssr2147	transcription start site region 2147	1314 bp upstream
Tssr71243	transcription start site region 71243	1530 bp upstream
Tssr71244	transcription start site region 71244	1505 bp upstream
Tssr71245	transcription start site region 71245	1490 bp upstream
Tssr71246	transcription start site region 71246	1461 bp upstream
Tssr71247	transcription start site region 71247	1433 bp upstream