rs52035999 SNP Detail

Summary

• ID
  rs52035999
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48654347 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCCTGCAA AGTCATGGAC
  AAACCCAGGT AGGAGAAGAG GCTGCCCTGC ATCTTGTCCC TGCAGCATCT CAGCTGGAAG
  TGGAAGGAGA GGTAGGGAAC GTTAGCCTGT CTCTAGGCAG ACTGAGGTCT CTGAAAGGCA
  GGCCATCAGC TCCGTAATTC CCCCTTTCAT GTTCCCATCT CAGTAATAGC TGGAGACAAG
  R
  TGCAAGAGGT AGAAAGTTTG GCTGAACCCT TGTCCCCTTG CCCTGGCCAT AACTTGGGTG
  CTCCAATGCC ATGTCCTCTA CCCCAAAAGG ATCCCCAAAA TAGCAGTCTC ATGTCTCCCC
  TCAAAATAGC CCTGAGACAA GTCCTTCTTA AAAGAGGAAC AGAGCCACAG AAATAGGGAA
  GCTGAGTTCA AACTTAGGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss62767943	NES17350419	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A		G	G	G	G		G
ss325408108	CHEV_17_48486644	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs52035999					SNP	G	G	G	G	G	G	G	G	G	A	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62767943	NES17350419	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48654347 () rs orientation: forward

Symbol	Name	Function Class
Rr335233	regulatory region 335233	1147 bp distal
Rr335234	regulatory region 335234	346 bp distal
Trem2	triggering receptor expressed on myeloid cells 2	within coordinates
Tssr145093	transcription start site region 145093	902 bp downstream
Tssr145094	transcription start site region 145094	874 bp downstream
Tssr145095	transcription start site region 145095	826 bp downstream
Tssr145096	transcription start site region 145096	793 bp downstream
Tssr145097	transcription start site region 145097	182 bp upstream
Tssr145098	transcription start site region 145098	509 bp upstream
Tssr145099	transcription start site region 145099	1161 bp upstream
Tssr145100	transcription start site region 145100	1190 bp upstream
Tssr145101	transcription start site region 145101	1227 bp upstream
Tssr145102	transcription start site region 145102	1326 bp upstream
Tssr148525	transcription start site region 148525	1371 bp downstream