rs52036855 SNP Detail

Summary

• ID
  rs52036855
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:43931943 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTAACTTCC TCAAGGTCTC
  CCAGCTTTGG AATGACAAAG CCATGATTCA TGCCCAGCTC TTTGTCGCTT CAAAGGCTGG
  GCTCATGAAC ACTCTGCATA TCACCCTTCT TCCTGGAGGG CATGGGTTTG GAACTGAATG
  CTAATGATCA CCCCAACAGA AATCTCTGTC TTCTGGCACA AATCTTGGCA TGACATCTTT
  S
  TAAGGAAGTT ACGAGGCTTA CAGCTCGAGT ACAGAAAGCA CACAGCACTG CAGTTTTGTT
  CTTACACTAA TTTAAATGCT ATTAATTCTT AGAGTCTTTT GTAATTTGCT TTTCACATAA
  ACAGAGCTTA GAATCCATTT TAAAACAAAA CCTCTTTGAG AAGATCACAC CTCTTCAAAT
  TCAGGCACTC TAAAGGTTTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61611957	NES17559203	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52036855					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61611957	NES17559203	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:43931943 () rs orientation: forward

Symbol	Name	Function Class
Rr387137	regulatory region 387137	919 bp upstream
Rr465555	regulatory region 465555	473 bp proximal