rs52037369 SNP Detail

Summary

• ID
  rs52037369
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:112687277 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACAA ATGGGCTAGG AAGACAGGAA
  M
  GTACCCAGCC CTCCTCTTTC CAGTA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss138726382	ENSMUSSNP210944	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
ss324170488	CHEV_12_113959054	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52037369					SNP	A	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112687277 () rs orientation: forward

Symbol	Name	Function Class
Cep170b	centrosomal protein 170B	673 bp upstream
Cpgi5179	CpG island 5179	417 bp proximal
Gm46382	predicted gene, 46382	within coordinates
Gm59466	predicted gene, 59466	within coordinates
Rr473583	regulatory region 473583	within coordinates
Rr473584	regulatory region 473584	850 bp proximal
Rr473585	regulatory region 473585	1184 bp proximal
Rr473586	regulatory region 473586	1362 bp proximal
Tssr115398	transcription start site region 115398	1587 bp downstream
Tssr115399	transcription start site region 115399	262 bp upstream
Tssr115400	transcription start site region 115400	661 bp upstream
Tssr115401	transcription start site region 115401	986 bp upstream
Tssr115402	transcription start site region 115402	1320 bp upstream
Tssr115403	transcription start site region 115403	1667 bp upstream
Tssr115404	transcription start site region 115404	1952 bp upstream
Tssr117886	transcription start site region 117886	849 bp downstream
Tssr117887	transcription start site region 117887	887 bp downstream
Tssr117888	transcription start site region 117888	917 bp downstream