rs52038171 SNP Detail

Summary

• ID
  rs52038171
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:108143450 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTAGT GGTTGACCTA TGGAACAATA
  R
  CAATAAAAAA CTGAATATTG CCTCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss138673130	ENSMUSSNP4139926	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
ss324152839	CHEV_12_109415401	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52038171					SNP	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:108143450 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5076	CpG island 5076	1045 bp proximal
Setd3	SET domain containing 3	within coordinates
Tssr114948	transcription start site region 114948	1292 bp upstream
Tssr114949	transcription start site region 114949	1660 bp upstream
Tssr114950	transcription start site region 114950	1942 bp upstream
Tssr114951	transcription start site region 114951	1945 bp upstream