rs52038781 SNP Detail

Summary

• ID
  rs52038781
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48767847 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACCCCTGGG TCAGCCGGGG ACTCATATCT CCAGGGACGA
  GTGTCGTATC CTGCTCTCTC ACTTCAGGTG GGCCTCTGTC CGTTGGCCTG TCCTTCTCTT
  M
  TGTGTCTCTG AATGACCCCA TTGGCCAGTC CTCTTGTTTT ATGTCTTTTC TCTGTCTGTC
  TCCTTCTTAT CTTTCTGTCA GAACTGCCTG CCCCTTCAT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
ss62766575	NES17348297	PERLEGEN	MM_PANEL2	f	SNP	A		C	C	C	A	C	C	A		A	A		A
ss145717252	ENSMUSSNP1447449	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C
ss325408732	CHEV_17_48600144	CHEVERUD	SCREENING_POP	f	SNP										A			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
rs52038781					SNP	A	A	C	C	C	A	C	C	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62766575	NES17348297	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48767847 () rs orientation: forward

Symbol	Name	Function Class
Rr370279	regulatory region 370279	1292 bp upstream
Rr528302	regulatory region 528302	298 bp distal
Rr528303	regulatory region 528303	856 bp proximal
Tssr145120	transcription start site region 145120	1536 bp upstream
Unc5cl	unc-5 family C-terminal like	within coordinates