rs52038892 SNP Detail

Summary

• ID
  rs52038892
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:131709324 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTTTTTTT CCCTTTGCCC
  CCATGGAGGG AGTCTTGCTA TGTAGCCCAG GCTAGCTTTA GGTTTTTAGA TTTATGTCTA
  TGGGTGTTTT GGCTGATGTA TGTCTGTGTA CCACATGCTT GCAGTACCCA GGAAAGCCAG
  AAGAAGGCAC CTGATCTCCT GGAACTAGAG CTACTGATGG TGTGAAAATC AAGCCCAAGG
  Y
  GTCCTCTAGA AGAGCAGCTG ATGTAGTTAA CCACTGAACA TCTCTATAAA CCCCAGACTA
  CCTCTGAACC CAAGACCTGC CTCCCTTTTG TCATCTAGTG CTGAGATTCT AGGCATGTTA
  TGCCAGGCCA AAAATTGTTT CTCAGGAAAG TTTTAAAATA CCATAAATAG CCAGTCAGTG
  GTGGCGCATG CCTTTGATTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss147472332	ENSMUSSNP676160	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T		C
ss321329609	CHEV_4_131537928	CHEVERUD	SCREENING_POP	f	SNP				T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs52038892					SNP	T	T	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131709324 () rs orientation: forward

Symbol	Name	Function Class
Epb41	erythrocyte membrane protein band 4.1	within coordinates
Rr600833	regulatory region 600833	47 bp distal
Rr600834	regulatory region 600834	85 bp proximal
Rr600835	regulatory region 600835	751 bp proximal
Tssr43622	transcription start site region 43622	713 bp downstream