rs52039152 SNP Detail

Summary

• ID
  rs52039152
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:37231068 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGCTTCCA TCTCTGTTAC
  TGTCAGAATC TGGCACCTCT CACCAGCTCT GAGATTCAGA GCTGTGGATG GAGGAGGGGG
  AAGGAAGGAG TTGAAGCCAG ACAGTCAGGC AATATTACAG AAGTGGAATC TTCCAGCGAG
  AGAACATTCT CTAAAGGAAA GAGCATCAGG GGCGAAAGAG GCCCTTGGTG AATTCAACAC
  M
  ATGTTGTGTA AAAGGAATGG CTGAGAAGTA GAAAGGGAAG TACCTTCCCT ATGTGACAAG
  ATAAGTAAAG GCCCAAACTA GGACTGTCCT TTCAGCTTCT CTGGTATTTC TACAGCTTGG
  GTTTTGGAGA CTTTCTTAGG TGGGCACCAG AGACTACAAG GGGACATATT TTTGTAAATC
  TTTGTGGAGG AGGGTCCTGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61768025	NES17689019	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs52039152					SNP	C	C	C	C	C	C	C	C	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61768025	NES17689019	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:37231068 () rs orientation: forward

Symbol	Name	Function Class
F13a1	coagulation factor XIII, A1 subunit	within coordinates
Rr271551	regulatory region 271551	1668 bp distal
Rr279043	regulatory region 279043	1750 bp distal
Rr281233	regulatory region 281233	1332 bp proximal
Rr283270	regulatory region 283270	1268 bp distal