rs52039160 SNP Detail

Summary

• ID
  rs52039160
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:29579928 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGTTTGACA GGCTCCTCCC ACAGTAGGGA GTGCTGGCCT
  CTCTTCCAAG CTACTGGGAC CACTTCCTCT TTTTTCACTC TGAAGATAGG AACTGCCCCA
  G
  GGCAGTCAGA AGCGATGGGC AGATTCCAGG CTGTGGTAGA CCTGCTTCAC CCGCTGGCCA
  GGGAGTGCTG AGGGCACCAG CCTATTGCCT CCCTCCCTG                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145431558	ENSMUSSNP2740968	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52039160					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:29579928 () rs orientation: forward

Symbol	Name	Function Class
Fgd2	FYVE, RhoGEF and PH domain containing 2	within coordinates
Rr405148	regulatory region 405148	within coordinates
Rr524885	regulatory region 524885	30 bp distal
Rr524886	regulatory region 524886	168 bp proximal
Rr524887	regulatory region 524887	666 bp proximal
Tssr143531	transcription start site region 143531	34 bp downstream
Tssr143532	transcription start site region 143532	14 bp downstream
Tssr143533	transcription start site region 143533	2 bp upstream
Tssr143534	transcription start site region 143534	15 bp upstream