rs52039315 SNP Detail

Summary

• ID
  rs52039315
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:33898560 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAATCACA GACAAGCCAC
  CCAAAACCGT TCCCTGGAGC TCGCAGCCAA GCCTAACCGT CTGTATTCCG CGGCCCTAGC
  AACAGCCAGG CGCCCTTAGT TACCAAACAG GAAGCACTCA GGCTGGAAGG CGGAACTTCC
  TTTGAGAATT CCCTTGTCCT TTTTGCAGCC GGTAGAATTT GCTTGCCTGT GTCTGTGAGG
  Y
  ACAGCTCTCT TTGCACGGAT AGATACACTC CCAGGACTTC CAAAACGTGC AAATCTGGAA
  GCTCGGGTGC TCCAGAGGAC CACAAAGTTC GGGGATGGAA GGCATAGGCT CCTGGGGTGC
  CAGGATGGTG GACTACAGGA TAGCAGGATG GACGACCACC AGATTGAGGG ATAGTATAAT
  ACCCAAAAGT GGCTTCAGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss134758207	ENSMUSSNP3236782	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs52039315					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:33898560 () rs orientation: forward

Symbol	Name	Function Class
Ccdc39	coiled-coil domain containing 39	101 bp upstream
Rr575077	regulatory region 575077	within coordinates
Tssr32964	transcription start site region 32964	163 bp upstream
Tssr32965	transcription start site region 32965	98 bp upstream