rs52039496 SNP Detail

Summary

• ID
  rs52039496
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:142947163 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCACA GGCCTCTGGG CTCCGCCATG
  G
  GGAGGTGGGC TTCTATTTTG AAAGA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss144594691	ENSMUSSNP2803064	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs52039496					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:142947163 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16967	CpG island 16967	within coordinates
Cpgi16968	CpG island 16968	391 bp proximal
Fscn1	fascin actin-bundling protein 1	within coordinates
Gm72694	predicted gene, 72694	1545 bp downstream
Rr378736	regulatory region 378736	within coordinates
Rr624074	regulatory region 624074	1022 bp distal
Rr624075	regulatory region 624075	416 bp proximal
Tssr49613	transcription start site region 49613	1045 bp downstream
Tssr49614	transcription start site region 49614	915 bp downstream
Tssr49615	transcription start site region 49615	418 bp downstream
Tssr49616	transcription start site region 49616	388 bp downstream
Tssr49617	transcription start site region 49617	208 bp downstream