rs52039592 SNP Detail

Summary

• ID
  rs52039592
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:64832542 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTATAATAT ATAGAAACAA
  CCTTATTTTT TAAGTATATG AATGCATGTA TACTAGCATT CTCATGATGT ATACTAGCAT
  TCTTGAGATA GTCTCATGAC TATCTCAAGC CTCACATAGG ATATCACAAT TGGCATCTAG
  GAATGTGATG AAGTTGTACC ACCCAGTATC ATTACATCTT AAGCAAGAAA GACAAGACTC
  Y
  AGGAGAAATC ATCAGGAGCA TAATGGTTAG AGATAGAGAA ACAGGGAGCA TGAGTGGGAA
  ACTAAGAACT TCAGAGAAGA ACTGATAAAC TCCAACATTG CCCTAGGATG CCATCAAGCT
  ATTGTCAGAA TGCCACTAAG CAGGATCTTA ACTTTTTAAT TGTGTGTGTG TGTTTATAAG
  AATCACATGT GCACATGGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61635088	NES17583750	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	C	T	T	T	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52039592					SNP	T	T	T	C	T	C	T	T	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61635088	NES17583750	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:64832542 () rs orientation: forward

Symbol	Name	Function Class
Dnajb6-ps	DnaJ heat shock protein family (Hsp40) member B6, pseudogene	543 bp upstream
Gm59451	predicted gene, 59451	397 bp downstream