rs52040896 SNP Detail

Summary

• ID
  rs52040896
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:141431748 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAACTCAT TTTCTAACTC
  CAGTTTTAAT AGTCTACATC TATTTAAAAT GTCACCATCT TCTGAATTTC GTGCATTTAT
  TGCCTAACAT TCTTACTGAG AGAAGGTAAG AGAGTATACA TTAATAATTA TGAAATACTA
  ATTAAAATAT TAGGCATCTA ATCTTTATAA AAATCAGCCT ACCTTCAAAA ATACCTTGGA
  Y
  ACTTTTCTTG GTTCTGTATC TAAAGCTCAT AAACAGGACA CCTATGGGAA GAAGTCTTGG
  GTTTTCTTCA AGACAGGAGG GAGGGGCTGA GAAACATTAA TATTCAGCAG TTTCAAAATT
  GAGTTTCTTA GAGCAGTGAT CTCAAAGTAG CAGTCTCTAG GCCCCATAGG GCTTATCAAT
  TATTGCATTT AGCCCCCAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61091293	NES16613391	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T		C	C	T	C		C
ss320994767	CHEV_3_141388951	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs52040896					SNP	T	T	T	T	T	T	C	T	T	T	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61091293	NES16613391	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141431748 () rs orientation: forward

Symbol	Name	Function Class
Unc5c	unc-5 netrin receptor C	within coordinates