rs52040968 SNP Detail

Summary

• ID
  rs52040968
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:75563960 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C GCACGAAGGC CCAACAAACC AGGCTTTGTT GTGGGAGCAG
  CGTCTGGGAA AGGCCAGAGT TTGTCATTCA TCAAACCCAA AACGCTGCGA GCTTACTCGC
  T
  GTTAAAAAAA AAAAAAAAAA AAAAAAAAAA AAGTCCCTGT AGCCCCGCCT CACCGCGTTG
  TATTGTGGGA ACTGCAGTTC TGGACTGTCC AGAGCTTGGA A                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss148372295	ENSMUSSNP508881	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J
rs52040968					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:75563960 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8370	CpG island 8370	63 bp distal
Hspa13	heat shock protein 70 family, member 13	within coordinates
Rr319131	regulatory region 319131	1760 bp distal
Rr325470	regulatory region 325470	within coordinates
Rr404916	regulatory region 404916	within coordinates
Rr404917	regulatory region 404917	840 bp upstream
Tssr141799	transcription start site region 141799	275 bp upstream
Tssr141800	transcription start site region 141800	1 bp downstream