rs52041004 SNP Detail

Summary

• ID
  rs52041004
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126575412 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGGTCTTG AACTCACAAT
  CCTATGATCT CAGTGCACCA AATACTGGCA TTTTATACAT GTGTGCTACC ATCCTTAGCC
  TGATCTTTTC ATTTCTTATT GTTATGGAGT AATTTTCTTC TATGTCTTTT CCAAAGAGAA
  AGTCATGACC TCTCCTGTTC TTGGCCATCT ATTATGACTA GGTTACGTAA GGCAAATTGA
  M
  GTTTTAGTAC CTTTAAATCA TGAACTACAT GGATTGCATA TGAAAGAGTG AAACTGAGCG
  AGACAAATAT AGACATCTAA TGAGAATGAT GATGGTACCA ACCAAGACTC ACAGATTAAC
  ATCATAACAG TAACAAGAGG ATCCCTTCCA AGAGATCTTA AAGGGGCTTG TTAAGTCTCA
  GAACAAAAGC ACCTGAGATG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135841100	ENSMUSSNP2974537	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	C
ss320948066	CHEV_3_126484681	CHEVERUD	SCREENING_POP	f	SNP				C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52041004					SNP	A	A	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126575412 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Tssr31579	transcription start site region 31579			1373 bp downstream
Tssr31580	transcription start site region 31580			1356 bp downstream
Tssr31581	transcription start site region 31581			1347 bp downstream