rs52041043 SNP Detail

Summary

• ID
  rs52041043
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:72154644 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGCCA CCCTGCGTCC AGATTTACCC
  R
  AGAAGGTCCA CGTCTCCACC CTCCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60630724	NES16282513	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A		G	A	G		A
ss322705523	CHEV_8_74225899	CHEVERUD	SCREENING_POP	f	SNP								A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs52041043					SNP	A	A	A	A	G	A	A	A	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60630724	NES16282513	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:72154644 () rs orientation: forward

Symbol	Name	Function Class
B3gnt3	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3	211 bp upstream
Cpgi20570	CpG island 20570	164 bp distal
Rr382258	regulatory region 382258	653 bp downstream
Rr665157	regulatory region 665157	222 bp distal
Rr665158	regulatory region 665158	within coordinates
Rr665159	regulatory region 665159	8 bp distal
Rr665160	regulatory region 665160	189 bp proximal
Rr665161	regulatory region 665161	1279 bp proximal
Rr665162	regulatory region 665162	1280 bp proximal
Tssr81749	transcription start site region 81749	246 bp upstream
Tssr81750	transcription start site region 81750	216 bp upstream
Tssr81751	transcription start site region 81751	159 bp upstream
Tssr81752	transcription start site region 81752	606 bp downstream