rs52041048 SNP Detail

Summary

• ID
  rs52041048
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:72901980 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTAACTCTT GGGGTTTTGC
  TGATTCTATC TCATGGGAGG ACCCAAAGAA AATAGTTAGT TCAGGCATCC TGCCCTGGGA
  TAGGTCCTGC CATCTCCCTT TCATTATTTA CTTTGGGTTA CCCATCTCAC GTTCTCCAGG
  GATCCTCAAG AGAGGACCTC GGTCATCAAA GTATGAAACA CTACTCTGGC TCCATCACAG
  R
  CCAGGCGAAG TTTAACACGG GTCATTGTGG CAGGAGCCGA TCTCAGTGCT TTGTCAAGAT
  AAAGGCTTAT TTCTCCCCAT CAGAGTAAAG TAGATTGCTA GTCCCAATTT TACATGAGAA
  ACTAAAGACC CAGGGGCTTT AAATAGCTGG GCCAAGGGTT ACACAGCTAG AAATGGCGGG
  GTCAAGATAC ACGCCAAGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60750494	NES16391659	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52041048					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60750494	NES16391659	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:72901980 () rs orientation: forward

Symbol	Name	Function Class
Cpgi362	CpG island 362	217 bp distal
Igfbp5	insulin-like growth factor binding protein 5	within coordinates
Rr22903	regulatory region 22903	1021 bp proximal
Rr22904	regulatory region 22904	1621 bp proximal
Rr34509	regulatory region 34509	780 bp distal
Tssr7342	transcription start site region 7342	442 bp downstream
Tssr7343	transcription start site region 7343	1078 bp upstream
Tssr12191	transcription start site region 12191	1782 bp upstream
Tssr12192	transcription start site region 12192	1302 bp upstream
Tssr12193	transcription start site region 12193	1149 bp upstream
Tssr12194	transcription start site region 12194	950 bp upstream
Tssr12195	transcription start site region 12195	598 bp upstream
Tssr12196	transcription start site region 12196	515 bp upstream
Tssr12197	transcription start site region 12197	496 bp upstream
Tssr12198	transcription start site region 12198	442 bp upstream
Tssr12199	transcription start site region 12199	393 bp downstream