rs52041389 SNP Detail

Summary

• ID
  rs52041389
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:32306824 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCCT ACAGGGGAAG CATAGACTCC
  C
  TTGGCCTTGG GGAGACTCAG GGATG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss147948863	ENSMUSSNP6755743	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss325136570	CHEV_16_32488092	CHEVERUD	SCREENING_POP	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs52041389					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32306824 () rs orientation: forward

Symbol	Name	Function Class
Gm59898	predicted gene, 59898	53 bp upstream
Rr514711	regulatory region 514711	138 bp distal
Rr514712	regulatory region 514712	within coordinates
Rr514713	regulatory region 514713	64 bp proximal
Rr514714	regulatory region 514714	765 bp proximal
Slc51a	solute carrier family 51, alpha subunit	127 bp upstream
Tssr4846	transcription start site region 4846	404 bp upstream
Tssr4847	transcription start site region 4847	374 bp upstream
Tssr137989	transcription start site region 137989	87 bp upstream
Tssr140806	transcription start site region 140806	1831 bp upstream
Tssr140807	transcription start site region 140807	845 bp upstream
Tssr140808	transcription start site region 140808	815 bp upstream
Tssr140809	transcription start site region 140809	787 bp upstream
Tssr140810	transcription start site region 140810	716 bp upstream
Tssr140811	transcription start site region 140811	347 bp upstream
Tssr140812	transcription start site region 140812	284 bp upstream
Tssr140813	transcription start site region 140813	182 bp upstream
Tssr140814	transcription start site region 140814	111 bp upstream
Tssr140815	transcription start site region 140815	88 bp upstream