rs52042225 SNP Detail

Summary

• ID
  rs52042225
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:59240608 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCTACCTT GCTTGAGTTG
  GAAAGCCAGC TAGGGCAGGA GCTGAGGCTG AAGCCATCTT CCCCTTCACC CTCCTGGGAA
  GAGATGGGAG CTGAGTATCA TGTGTCGTGT CCCCCCCCCC CCCCCCCCAA TGTCATAGTG
  TCAAATTCTG GGCGACTCAG CATCACGTTT ACTCAAAGTT AGATGGATAA GCACAAGGCC
  K
  GGTCACCTCA TTAAGTTCAC CTAATATCCA TCAAAGAGGC AGGAAAGTTA ATGCCTGCCA
  TTTGAATCAA CACAGGTATT GTCAATATAC CCAAGGTTTA GCAAACATCT AACAACAGTA
  GGACTTCTTG TAAAATGGTG AGCCCGATCT TGTTCTTACT TCTCTAGTAA AACAGCATCA
  AAAGATTTCA GCAAATTTTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52330505	NES15283258	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52042225					SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52330505	NES15283258	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:59240608 () rs orientation: forward

Symbol	Name	Function Class
Pla2g12b	phospholipase A2, group XIIB	within coordinates
Rr215348	regulatory region 215348	1993 bp proximal
Rr224847	regulatory region 224847	within coordinates
Tssr93483	transcription start site region 93483	1353 bp downstream
Tssr93484	transcription start site region 93484	1117 bp downstream
Tssr93485	transcription start site region 93485	1099 bp downstream