rs52042269 SNP Detail

Summary

• ID
  rs52042269
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:74791615 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAAATGAC ATTTTAAAAA
  TGCTGCAGGC AAGATAATAC CCATAGTTCC CTTGGTTCCT CTGCCCTCTA CTGGTGAGGT
  CTCACCCTTG AAAACTTTCC CTTCCCACCA AAGTCTGAGT GTGCACACAG GACACTCCCA
  CAGGAACGGG CGTGTGCATT CTGGTCTCCC CCAGCAGGAG GGGAATCCTG TTGGTCTGCA
  Y
  GGGATAGAGT GGTGACTTCA CAGACAAATC CCTGTTCTAA AAATGTGATG AGGCCAAGAA
  AGAGAGAAAG CCAACAAAGC GGCTGGAGGT GCCCTTGCTG GCTGAGCACG GCCTGCAGGG
  AGGGGCCCAC GGGTTCCAAT CACACCCGGT AGAGCCCATG TTGCAAGTGA TGGGGCCCTA
  TCCCTGCTGC CTTAGTTAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss52570511	NES15642354	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs52042269					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52570511	NES15642354	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:74791615 () rs orientation: forward

Symbol	Name	Function Class
Gm62792	predicted gene, 62792	within coordinates
Rr504378	regulatory region 504378	373 bp distal
Rr504379	regulatory region 504379	within coordinates
Rr504380	regulatory region 504380	122 bp distal
Rr504381	regulatory region 504381	684 bp proximal
Rr504382	regulatory region 504382	1008 bp proximal
Rr504383	regulatory region 504383	1551 bp proximal
Tssr131597	transcription start site region 131597	1037 bp downstream
Tssr131598	transcription start site region 131598	998 bp downstream
Tssr134806	transcription start site region 134806	1010 bp downstream