rs52042336 SNP Detail

Summary

• ID
  rs52042336
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:171181308 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGCA CTTGGGAGGC AGAGGCAGGC
  R
  GATTTATTGA GTTCAAGGCC AGCCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146160863	ENSMUSSNP2169363	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320118195	CHEV_1_173283871	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52042336					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171181308 () rs orientation: forward

Symbol	Name	Function Class
Gm37154	predicted gene, 37154	386 bp upstream
Pfdn2	prefoldin 2	Intron
Rr423296	regulatory region 423296	1801 bp proximal