rs52042909 SNP Detail

Summary

• ID
  rs52042909
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:75425647 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATGCTCATG GGACTGTGGT GAGAATGTAG AAAAAGCACT
  CAGCAGATAG TAACTGCTAT TGTTATGACC CAAGGCTTTC CACTGCCTTT TAACTACTCT
  W
  TTGTCTGACT CTAGATGACT AGGCCTATCT AGAGTCTCTG GGTTAAAGAT TCCACATAAA
  AGAGGGGAAA GGTTGACTGA CCTTCGAGAA ATCTTCTAC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss139749972	ENSMUSSNP4922525	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	T
ss324673334	CHEV_14_75588014	CHEVERUD	SCREENING_POP	f	SNP				A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52042909					SNP	A	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:75425647 () rs orientation: forward

Symbol	Name	Function Class
Lcp1	lymphocyte cytosolic protein 1	within coordinates
Rr495439	regulatory region 495439	1498 bp distal
Tssr126634	transcription start site region 126634	913 bp downstream