rs52043709 SNP Detail

Summary

• ID
  rs52043709
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:53934894 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTCTACTT CAAATTAAAA
  TAAAGTTTAA AAGAGAGGAC TGTGTAGAGG GAGGAGTGTA GCTCAGTTGG TGGAGTGCAG
  GCCCAACATG AACAAAACCT TTGGTTCAAA CCCCAGCATG GAGCAAATCG GGTGTGGTAG
  CACATACCAG AATGATAGGT CTTGGGAAAT GGAAGCAGGA GGGAGCACCA GAAATTCAGG
  S
  TTATCTTTGG CTAAATACTA ATTGTGAGGT CAGCCTGGAC TATGTGAAAC CTTATCTCAA
  AAATCAATCA TCAATCAATC AATCAATCAA ACTTGGATTC CTGTTATATA ACAATGAGGA
  AATTTTAGAA TGCAGGAAAC ACACATAGAT ACTCTAGTGT ACTCGGTGTC CCCAAGGATT
  TGTGAAATAC TTCAGAATGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss147113953	ENSMUSSNP7243729	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs52043709					SNP	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:53934894 () rs orientation: forward

Symbol	Name	Function Class
Man1a	mannosidase 1, alpha	within coordinates
Rr215194	regulatory region 215194	707 bp proximal
Rr222944	regulatory region 222944	1459 bp distal
Rr227916	regulatory region 227916	within coordinates