rs52044519 SNP Detail

Summary

• ID
  rs52044519
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126574941 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTCCCTTT AAATATCAAG
  TGGGGAAGAG AATCTATTGG ATATATTTCC AACCACTGGT ATTTCTGTTT CTTCGTTGTC
  TGTTTTAATA TTCCTATTTG TTCTTTGGAG TAAAAGCCAT GTTATTCCTG GAGACAGCAT
  GTTCTTATTA ACATTAATAG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TATCAGTCCT
  S
  CATTCTTAGG AGCTAAATCT CCTGACAAAG AAGATGTTGC CTACTGTGTT CCAGCAAGCT
  GTTTGCACAA TGTATTCTTT CCTGAAATCC ATGCATTTGG ATGAATGATT CAGAATATTT
  AGAATAGAGT CAACTGACAG TTCAAGTGAT GGGGTTCTGA GTAAGAAAAA GAATGATAGC
  ATTTTCTTGA CATTTTAGTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135841088	ENSMUSSNP18250	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52044519					SNP	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126574941 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Tssr31579	transcription start site region 31579			902 bp downstream
Tssr31580	transcription start site region 31580			885 bp downstream
Tssr31581	transcription start site region 31581			876 bp downstream