rs52044907 SNP Detail

Summary

• ID
  rs52044907
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:91052453 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCAG TTTGAATTGA TAGAAGGGTA
  M
  GACTAGCTCC TTTCATCTAC ACACG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61198262	NES16702730	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52044907					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61198262	NES16702730	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:91052453 () rs orientation: forward

Symbol	Name	Function Class
Cxcl2	C-X-C motif chemokine ligand 2	within coordinates
Gm73232	predicted gene, 73232	1390 bp upstream
Rr614420	regulatory region 614420	1401 bp distal
Rr614421	regulatory region 614421	1532 bp distal
Rr614422	regulatory region 614422	711 bp distal
Tssr47224	transcription start site region 47224	885 bp downstream
Tssr47225	transcription start site region 47225	783 bp downstream
Tssr47226	transcription start site region 47226	714 bp downstream
Tssr47227	transcription start site region 47227	520 bp downstream
Tssr47228	transcription start site region 47228	457 bp downstream
Tssr47229	transcription start site region 47229	436 bp downstream
Tssr47230	transcription start site region 47230	411 bp downstream
Tssr47231	transcription start site region 47231	381 bp downstream
Tssr47232	transcription start site region 47232	234 bp downstream
Tssr47233	transcription start site region 47233	184 bp downstream
Tssr47234	transcription start site region 47234	149 bp downstream
Tssr47235	transcription start site region 47235	594 bp upstream
Tssr47236	transcription start site region 47236	614 bp upstream
Tssr47237	transcription start site region 47237	663 bp upstream
Tssr47238	transcription start site region 47238	669 bp upstream
Tssr47239	transcription start site region 47239	729 bp upstream
Tssr47240	transcription start site region 47240	741 bp upstream
Tssr47241	transcription start site region 47241	756 bp upstream
Tssr47242	transcription start site region 47242	793 bp upstream
Tssr47243	transcription start site region 47243	816 bp upstream
Tssr47244	transcription start site region 47244	850 bp upstream
Tssr47245	transcription start site region 47245	870 bp upstream
Tssr47246	transcription start site region 47246	921 bp upstream
Tssr47247	transcription start site region 47247	965 bp upstream
Tssr47248	transcription start site region 47248	1028 bp upstream
Tssr47249	transcription start site region 47249	1098 bp upstream
Tssr47250	transcription start site region 47250	1236 bp upstream
Tssr47251	transcription start site region 47251	1300 bp upstream
Tssr47252	transcription start site region 47252	1352 bp upstream
Tssr51810	transcription start site region 51810	1451 bp upstream
Tssr51811	transcription start site region 51811	1397 bp upstream
Tssr51812	transcription start site region 51812	367 bp upstream
Tssr51813	transcription start site region 51813	350 bp upstream
Tssr51814	transcription start site region 51814	613 bp downstream
Tssr51815	transcription start site region 51815	647 bp downstream
Tssr51816	transcription start site region 51816	681 bp downstream