rs52045377 SNP Detail

Summary

• ID
  rs52045377
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72213286 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGATGTGT TTAACAGGAT
  TAGCTTTATT ATAGTTTTGT TAAAGAGCTT TTTTTTTTTT TTTTTTTTAT TAATTGGACA
  CTGCTTCACT AAATAGCCTT TGAGGAACAT GTCCTACTTT TCAAAAACTT TATAGTAATG
  GTTATATGAT AGCTTGTAGG TTTAGCTCTT TATTATTGAA AATATAGGAT TTAATTTTTG
  R
  CTGTTATCAA TAATTCTCCA TTAAACTTTC TTTACCATAA AATTTTGAAA GTAGAATAAA
  GGATCTTTTA GATTTTGATA GCTACTGGTA AAGTTTTTAT TCAAAGTCAC ACCAATATAT
  AACCTAGAGT TTGCCAATAG TGAATGTTAT CCTTCTTTTA ATCTTATTAA AAAGTAGTAT
  TAGTCTTATA GAAAAGAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61419730	NES16806326	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52045377					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61419730	NES16806326	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72213286 () rs orientation: forward

Symbol	Name	Function Class
Tssr85977	transcription start site region 85977	128 bp downstream
Tssr85978	transcription start site region 85978	665 bp upstream
Zfp280d	zinc finger protein 280D	within coordinates