rs52045872 SNP Detail

Summary

• ID
  rs52045872
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:61910392 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCAGGTCTA AAAGAGAGAG ACGCCCCCTG CAATCAGCGC
  AGATTTGGGG CCGCTGATGT GGTTTGGAGG CCTCATTTAC GAAACTGGAA GTCTGAGTCT
  R
  GTCTAGTGAT GCTCCCTCCA TCCTTGGCCA GCCCTCCTCC GAGACACCCC CTCGGGGCAG
  AAAGAAGGTG ATCTCCTAAA ACTCCCTGTG TCAGGAAACT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52563390	NES15634475	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52045872					SNP	A	A	A	A	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52563390	NES15634475	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:61910392 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7132	CpG island 7132	1270 bp distal
Cpgi7133	CpG island 7133	258 bp distal
Gm54427	predicted gene, 54427	342 bp downstream
Pvt1	Pvt1 oncogene	within coordinates
Rr390819	regulatory region 390819	within coordinates
Rr503088	regulatory region 503088	413 bp distal
Rr503089	regulatory region 503089	87 bp proximal
Rr503090	regulatory region 503090	855 bp proximal
Tssr131427	transcription start site region 131427	485 bp downstream
Tssr131428	transcription start site region 131428	673 bp upstream
Tssr131429	transcription start site region 131429	741 bp upstream
Tssr134486	transcription start site region 134486	595 bp downstream
Tssr134487	transcription start site region 134487	616 bp downstream