rs52046140 SNP Detail

Summary

• ID
  rs52046140
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:34574289 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGACACCAC AGCTTGAAAC
  ACACATGCAT GTGCAAGCAA GAACAAACAT ACACACACAT ACACATGCAC TCACAAGTGC
  GAGTGTGCAT GAGCATCTTT CTAAACAGCA CCATCAACTG GGGTCTAAGT ACTCAAACAC
  ATGAGCCTAT AGGAGACTGT GTCATTCACA CCACCAAAAA ATAATATGAA AAAAAGTTTT
  W
  AATACAGCTA TGCTGACTCT GTAGCTAAGA AAAAGGTTTT AAGAGATTCA TGGAAAAATA
  GCAAGTCAGT GGTAAGAATG TTTAATGTAT TATGAACTTC TTAAGTGGCA CACAGCCTAT
  TAGGCCAAAA TCACATATAC TTTTAAATGC TTAACAAAAC AGCTTTGGAT TTTATTTCTT
  AACAGTATTC TAACTGTTCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60592251	NES16320170	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52046140					SNP	T	T	T	T	T	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60592251	NES16320170	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34574289 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20241	CpG island 20241	980 bp proximal
Dctn6	dynactin 6	within coordinates
Rr400814	regulatory region 400814	1211 bp upstream
Tssr80889	transcription start site region 80889	627 bp downstream
Tssr80890	transcription start site region 80890	681 bp downstream
Tssr80891	transcription start site region 80891	1308 bp downstream
Tssr80892	transcription start site region 80892	1376 bp downstream
Tssr80893	transcription start site region 80893	1657 bp downstream