rs52046154 SNP Detail

Summary

• ID
  rs52046154
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117730072 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACACCAGA ATTGTGCTGT
  CTTTTGGTGG CCTACTATGA GCAGACCCTT CAGGGTGTGG GGTCCTTGCC TCTTCTGGGG
  GAAGCCTGGC TGTGGGAATC GGCCCTTAGC CCCTCCCCTC CTAAGAGTCG GTCACCTGGG
  AAACCATCCG TGCCCTGGGA TCAGCCCTCG AAAGAGGCCC TGCCCCTGCC CGCAGTGGCT
  R
  AGCACCCTGT GCTTATCCCA GGGCACCTTT CTGCCTCTGA GGGAGAAGAG CTGAGAAATC
  TGGCCCCACT GGTCCGCTAT TTCCTTATCC CTACTAGTTT GAAAGCAGTG TCAAGATAAA
  ACTTTCTCCC TGTAACAGTG GAAGTGGCAG GGCTAGGAAA TTTATTAAGT TACTAGAAGA
  CCCTAGCCAG GTCACCTCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss147294986	ENSMUSSNP6369415	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs52046154					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117730072 () rs orientation: forward

Symbol	Name	Function Class
B4galt2	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2	139 bp downstream
Ccdc24	coiled-coil domain containing 24	264 bp upstream
Gm40233	predicted gene, 40233	1646 bp upstream
Rr598243	regulatory region 598243	1874 bp distal
Rr598244	regulatory region 598244	within coordinates
Tssr42995	transcription start site region 42995	1558 bp upstream
Tssr42996	transcription start site region 42996	1540 bp upstream
Tssr42997	transcription start site region 42997	837 bp upstream
Tssr42998	transcription start site region 42998	315 bp upstream
Tssr42999	transcription start site region 42999	282 bp upstream
Tssr43000	transcription start site region 43000	261 bp upstream
Tssr43001	transcription start site region 43001	83 bp upstream