rs52047860 SNP Detail

Summary

• ID
  rs52047860
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70412305 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCCGAGAAC TCAGAGATCT GCCTGCCTCT GCCTCCCAAG
  TGCTGGGATT AAAGGCCTGT GCCATCACTG CCAGGCAGGA ATTCAATTTT TCCAGGTTCT
  Y
  AGATCCAAAA TCTTGTTAAC GTGACTTTCC CCATACCAAC ATTGAATCTA TGAAAATCTG
  ACTACTCCCC ACATTTCCCA AGTTTCTTTG TCTAAATCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	MSM/Ms	SM/J
ss132372224	ENSMUSSNP3763624	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
ss323735940	CHEV_11_70334981	CHEVERUD	SCREENING_POP	f	SNP		T		C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	MSM/Ms	SM/J
rs52047860					SNP	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70412305 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3187	CpG island 3187	784 bp distal
Gltpd2	glycolipid transfer protein domain containing 2	743 bp downstream
Rr450319	regulatory region 450319	1239 bp distal
Rr450320	regulatory region 450320	1890 bp proximal
Tssr102727	transcription start site region 102727	1839 bp downstream