rs52048746 SNP Detail

Summary

• ID
  rs52048746
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:108777198 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCGGC CCTGATCTGA CCCACACCTC
  M
  GTCGTGACTC TCTAGGTCTC AGACT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61215759	NES16730237	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	C	C	A	C	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52048746					SNP	A	A	A	A	A	C	C	A	C	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61215759	NES16730237	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:108777198 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16204	CpG island 16204	within coordinates
Gak	cyclin G associated kinase	within coordinates
Rr616724	regulatory region 616724	397 bp proximal
Rr616725	regulatory region 616725	688 bp proximal
Tmem175	transmembrane protein 175	451 bp upstream
Tssr47844	transcription start site region 47844	459 bp upstream
Tssr47845	transcription start site region 47845	658 bp upstream
Tssr47846	transcription start site region 47846	696 bp upstream
Tssr52443	transcription start site region 52443	339 bp downstream
Tssr52444	transcription start site region 52444	354 bp downstream
Tssr52445	transcription start site region 52445	380 bp downstream