rs52048990 SNP Detail

Summary

• ID
  rs52048990
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171075941 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAATG TGGTGATGAT GGGAGGGGGG
  R
  TTCCTCATTT TTGTGTTAAT CCATC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss119996784	PARCsnp_1.12469	PARC_SEQ	INBRED	f	SNP			G	A
ss119998533	PARCsnp_1.01535	PARC_SEQ	INBRED	f	SNP			G	A
ss146158257	ENSMUSSNP6000893	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss320117551	CHEV_1_173178503	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs52048990					SNP	A	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171075941 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1016	CpG island 1016	852 bp distal
Gm71631	predicted gene, 71631	within coordinates
Ndufs2	NADH:ubiquinone oxidoreductase core subunit S2	within coordinates
Rr372446	regulatory region 372446	within coordinates
Rr423259	regulatory region 423259	760 bp distal
Rr423260	regulatory region 423260	1212 bp distal
Rr423261	regulatory region 423261	685 bp distal
Rr423262	regulatory region 423262	241 bp proximal
Rr423263	regulatory region 423263	1457 bp proximal
Rr423264	regulatory region 423264	1737 bp proximal
Tssr10000	transcription start site region 10000	995 bp downstream
Tssr15023	transcription start site region 15023	1251 bp upstream