rs52049321 SNP Detail

Summary

• ID
  rs52049321
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:108776055 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAACAAGTT CCCTGCTCCT
  ACCAATCACA ATTGTCATGG ACAACCTTAA CAAGATGACT CTCCAATCCT GAGAGCTACT
  TCAGACCTGA GTCAGGCCAC TCTTCTCCCT GAACCTGAGA TCTGGCATAC TCCTAGATAC
  TGATGAACAA AATAAACAAA TTAATAATAA TAATAATAAT AAAAAGGCAC AGTGAGTGCC
  Y
  GAAGAAGATT TATTCTCTTG CAGAGGAGAA GAGCAACACT GGATTCCTAG CAACCATACA
  GAGGTTAACG ACTGTCTCTA ACTACATTTC CAGGGGATCC AATGTCCTCT TCTGGTCTCA
  GCAGGCAGTA CACATAGATA CTGTCCAGTG ATGGAGGCAG GCAAAACACC AGTTTTTTAA
  AAAAGTAAAT CTTAAAAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss149026491	ENSMUSSNP4898277	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss321637447	CHEV_5_109057208	CHEVERUD	SCREENING_POP	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs52049321					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:108776055 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16204	CpG island 16204	955 bp proximal
Gak	cyclin G associated kinase	within coordinates
Rr616724	regulatory region 616724	1540 bp proximal
Rr616725	regulatory region 616725	1831 bp proximal
Tmem175	transmembrane protein 175	1594 bp upstream
Tssr47844	transcription start site region 47844	1602 bp upstream
Tssr47845	transcription start site region 47845	1801 bp upstream
Tssr47846	transcription start site region 47846	1839 bp upstream
Tssr52443	transcription start site region 52443	1482 bp downstream
Tssr52444	transcription start site region 52444	1497 bp downstream
Tssr52445	transcription start site region 52445	1523 bp downstream