rs52049758 SNP Detail

Summary

• ID
  rs52049758
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:122528962 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAAAAATG TAGCAGGTCG
  TTGAATTATT TAAGTGATCA GTTCTGGTAG ACCACTAGCC ATTCCGAGTC GTTTAGAGAA
  GGCGAGCATT GGCAAATCAT GTTTAGACTC CAGAGCTGGC GGGAGTCACA GCTGGGACGT
  GACTGCTGAG GGGGAAGCGG TTTGAAGGTA GAGTAGATGT CGGTTATCCT GTAAGAGGGT
  R
  TGAGGGACAG TCCGGCTGGG AAAGCAAGCT GCTAACAATA CAGAAAGAAC GCTAGCCTTT
  TCCTCAACAT CTGAAATAAA TGACTAGCCT TTGAGGATGG TGGACTCTGG GAGGATGTGT
  TTGGGGGATG GGGAGGAGAA ACGGCAGCTT TATCACTCCT TAGGACAGTA TTCCTCCATA
  ATGCTGCGAG TGGAGCAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52249018	NES15337115	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	G	A	G	A	A	A	A	A	A	G
ss147651282	ENSMUSSNP4213694	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52049758					SNP	G	G	A	A	A	G	A	G	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52249018	NES15337115	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:122528962 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2304	CpG island 2304	433 bp proximal
Ppm1h	protein phosphatase 1H (PP2C domain containing)	within coordinates
Rr226290	regulatory region 226290	within coordinates