rs52050477 SNP Detail

Summary

• ID
  rs52050477
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:143802095 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGTG TGTGTGTGTT TGAGACAGGG
  T
  TCCTCATCGA TCCTGGAGCT CTCTG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss144604267	ENSMUSSNP5719092	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52050477					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:143802095 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16998	CpG island 16998	1124 bp proximal
Eif2ak1	eukaryotic translation initiation factor 2 alpha kinase 1	1491 bp upstream
Rr399488	regulatory region 399488	749 bp upstream
Rr399489	regulatory region 399489	1218 bp upstream
Rr624298	regulatory region 624298	848 bp proximal
Rr624299	regulatory region 624299	958 bp proximal
Rr624300	regulatory region 624300	1459 bp proximal
Rr624301	regulatory region 624301	1798 bp proximal
Tssr49676	transcription start site region 49676	1446 bp upstream
Tssr49677	transcription start site region 49677	1479 bp upstream
Tssr49678	transcription start site region 49678	1509 bp upstream