rs52051183 SNP Detail

Summary

• ID
  rs52051183
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:26492161 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCATTGTGA TGATTCGTCT
  TGGTGTCAGC TGGGCCTCAC TTAAGCGTCA CCTAGGAGAC ACACCTCTGA GTGTCCTATA
  GAAGTCTAAA GGAGTCCCTT CTTGCTGACT CACTGAATAC ATGCATCTCT CCGTGGTGCT
  TCCAGCAGGG GTTGAAGTGG GGGAAGTGCC CGGGAGAAGA TGGCATTCAG CAGAATTGGA
  Y
  GGCCACCATT GCCAATCAGC AGAGCTTCAT GACCACCACT GAGTCTTCTA AAATATTCAG
  TTCAGATCCG GTGCTGGAAA CCTGCCCTTC TGTGTGAACT ACTGCTGCAA AGGTGACTAT
  ATATCGGGCT TTACTTGACA ATTGTAAGCT GGACTGTGGA TATCTCAGGA CTCTGCCATT
  TCATGGGGAC TGGGCCTAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52328629	NES15372061	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52051183					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52328629	NES15372061	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:26492161 () rs orientation: forward

Symbol	Name	Function Class
D12Mit219	DNA segment, Chr 12, Massachusetts Institute of Technology 219	1049 bp distal
Rr464136	regulatory region 464136	1960 bp proximal
Rsad2	radical S-adenosyl methionine domain containing 2	584 bp downstream
Tssr112998	transcription start site region 112998	1579 bp upstream
Tssr112999	transcription start site region 112999	1626 bp upstream
Tssr113000	transcription start site region 113000	1750 bp upstream
Tssr115902	transcription start site region 115902	695 bp downstream
Tssr115903	transcription start site region 115903	1027 bp downstream
Tssr115904	transcription start site region 115904	1044 bp downstream
Tssr115905	transcription start site region 115905	1349 bp downstream
Tssr115906	transcription start site region 115906	1477 bp downstream
Tssr115907	transcription start site region 115907	1532 bp downstream
Tssr115908	transcription start site region 115908	1572 bp downstream
Tssr115909	transcription start site region 115909	1658 bp downstream
Tssr115910	transcription start site region 115910	1710 bp downstream
Tssr115911	transcription start site region 115911	1760 bp downstream
Tssr115912	transcription start site region 115912	1774 bp downstream
Tssr115913	transcription start site region 115913	1809 bp downstream
Tssr115914	transcription start site region 115914	1861 bp downstream
Tssr115915	transcription start site region 115915	1890 bp downstream
Tssr115916	transcription start site region 115916	1947 bp downstream
Tssr115917	transcription start site region 115917	1993 bp downstream