rs52051531 SNP Detail

Summary

• ID
  rs52051531
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:40519480 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCAGAGCT TAGTATGATT
  GTTGTCCTTG TTGTTGTCCT GGCGGTTGGC CTACCACTCT TGGGAGCATG TCTTGGTAAC
  CCGGGATGAA GTTCTCAGAG CTGGTGGAGG CCACCGGGCT AGGGAGGTAA CTTCCCCAGT
  GCGGTGGAAA ATCAGTGTCT GGGGACCCAG TCCTGGGCGG TACCAAACGC TTTGCCAAAC
  M
  CGAAGTGAAA CAAAAAGTAG GTGTAAAAGT TCGCGCCTCT GTTGGAGACA GCCGCGCACC
  CCCTCCCTGC CTGCCGCGCA CCCCCTCCCT GCCTGCCGCG GTATTGGGCT GCACCCGGGG
  ACTTCGGGTG GGTCCCACTC ACGGCGCCTG GACACTGTGT AGGGCGGGCT TCAGTTTGCC
  ACTGGTCAAG GAGCGGAGTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147693570	ENSMUSSNP5404705	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52051531					SNP	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:40519480 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7065	CpG island 7065	within coordinates
Gm63080	predicted gene, 63080	within coordinates
Rr406269	regulatory region 406269	1782 bp proximal
Rr501588	regulatory region 501588	1039 bp distal
Rr501589	regulatory region 501589	476 bp distal
Rr501590	regulatory region 501590	within coordinates
Rr501591	regulatory region 501591	1407 bp proximal
Tssr4586	transcription start site region 4586	782 bp downstream
Tssr131170	transcription start site region 131170	1193 bp downstream
Tssr131171	transcription start site region 131171	1163 bp downstream
Tssr131172	transcription start site region 131172	1080 bp downstream
Tssr131173	transcription start site region 131173	1030 bp downstream
Tssr131174	transcription start site region 131174	1002 bp downstream
Tssr131175	transcription start site region 131175	859 bp downstream
Tssr131176	transcription start site region 131176	818 bp downstream
Tssr131177	transcription start site region 131177	763 bp downstream
Tssr131178	transcription start site region 131178	727 bp downstream
Zfpm2	zinc finger protein, multitype 2	within coordinates