rs52052284 SNP Detail

Summary

• ID
  rs52052284
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172117804 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCCT CTCTTAACTG TACAGATTCA
  K
  CCGTGACCTC CTCACCTTGC AACCG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120008658	PARCsnp_1.18407	PARC_SEQ	INBRED	f	SNP			G	T
ss120011744	PARCsnp_1.08139	PARC_SEQ	INBRED	f	SNP			G	T
ss146186760	ENSMUSSNP6752439	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss320123914	CHEV_1_174220368	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs52052284					SNP	T	T	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172117804 () rs orientation: forward

Symbol	Name	Function Class
Atp1a2	ATPase, Na+/K+ transporting, alpha 2 polypeptide	within coordinates
Gm39704	predicted gene, 39704	943 bp upstream
Gm57554	predicted gene, 57554	within coordinates
Tssr15205	transcription start site region 15205	839 bp upstream
Tssr15206	transcription start site region 15206	1086 bp downstream