rs52052843 SNP Detail

Summary

• ID
  rs52052843
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:60803118 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTATTCTTC CATTCAACAT
  GCCCAGCTCT ATTTTTGTGT TTAATTGTGG TGCCATATCA CCTAGCTTTA AAGTTCACCA
  CCTTAAACAT TCTGAGTATG CATTTCAGTG GTGTGGAATA TGTTCACATA CGTACAACTC
  ACGTACATAC AACTTTGTCT TGGAGAAACT ATTAAAGGCT AACTAATTTG GAAACTCCAT
  S
  GAACAGATTT CCCTCCAACC TGTGATGGCT GCTGTTCTCC TTTGTGCTTC CTCATCTGAA
  ATCGTAAGGT GCCTGTTTCT GTGGCCTATT TGTTTCAATA GGGTGACATT ATCAGGCTCA
  GCCATGGGGT GAACTCCTGC CAGCAGTTTC CCGCCTCTGC TGCTCTAATC TAGTCCACCC
  ATGGATAGCT ATCTGGGTGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61825833	NES17748930	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	G	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs52052843					SNP	C	C	C	C	G	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61825833	NES17748930	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:60803118 () rs orientation: forward

Symbol	Name	Function Class
Dapk1	death associated protein kinase 1	within coordinates
Rr273140	regulatory region 273140	918 bp distal
Rr276884	regulatory region 276884	within coordinates
Rr284608	regulatory region 284608	682 bp distal