rs52053526 SNP Detail

Summary

• ID
  rs52053526
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:39006373 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGATGGCCT CAAATTTAAA
  TTATATAAAT TAACAAATTA TACAAGTTAA ATATAAATTA TACTCATTGA ATATAGTTAA
  TATATAATAT ACCATAAATA TAAGTTGTAT GCATTAAATA ATCATTAAAA AAAGAACTTA
  AGAGAGCTGA AATAACCATG CATGCATGCA AATAACCAGG CAGACCGATA GGAAGATGAC
  R
  GACAGGGGCA GCTGGAGCTC TTGATCCCCA TTTTGTTTTC AGAGAATTAA CAATCCTGGA
  AAAGAAGAAT CATGGAAAGA AACCATCACA TATTGGTTTA TATACTTTTT CACTTATGCT
  TTAAGAGTGG TTATTATTTT ATACAATCCC TCACAACCTG TGACTTGTGT TTCAAGAATA
  TCTTGCATCT TGTTCATAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61383220	NES16759350	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52053526					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61383220	NES16759350	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:39006373 () rs orientation: forward

Symbol	Name	Function Class
Gm47085	predicted gene, 47085	1890 bp upstream
Or8ab1a-ps1	olfactory receptor family 8 subfamily AB member 1A, pseudogene 1	1848 bp upstream