rs52053627 SNP Detail

Summary

• ID
  rs52053627
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:20772619 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCAAGATA CTGGCCATCC
  TTGTCAGCAG GAAGTGGCCT AAAGAGGTCT GCGTCCCTTT TTTTTTCTAC CCTTATTTCT
  CTCCTCTCTG GTGTTAGGGG GCTGGAAGGG TTAGGGTAGA GTAAAAGCTG AAGGGTGAGA
  TGTATAAGAA CACAATAAAC TAATAAAACA GAGACACCAA AAAGGAAGGA ATTCCTGAAA
  Y
  TAGTTAGGAG TAAGACCCTA GATTCAGTAC GGGAGTCTGT CCCTGTGTTG GTAACTGAAG
  CTGGGATTAC TTCTATAAGC TATCCAGTTT TACTTGAAGG CTGAATAACC AAGGGATCGA
  ATTTCTTCCT AATCATTCAA ACCGCAGGAA AGAACACAAA GCCTTGCTGC TGTGTATGTT
  CTGTACAAAA ACTGTTTTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss131781647	ENSMUSSNP2155644	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs52053627					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:20772619 () rs orientation: forward

Symbol	Name	Function Class
Gm32213	predicted gene, 32213	1457 bp downstream
Lgalsl	galectin like	957 bp downstream
Rr443482	regulatory region 443482	750 bp proximal