rs52055264 SNP Detail

Summary

• ID
  rs52055264
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115567323 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGTTTCTTA CCAGTTGGAA GGTGTTGGGG GGCACTGAGC
  TATCTCCAAC CCGACCCAGG AAGATTGGGG GCACCTTCTA AATTCTCAAT AGCGAGGACC
  R
  GGGAGGAAGG ACTAGGGAGG GTTCCCCCAT CCGAAGCCGA GCTACCTTGA ACGCACCGGG
  AAGCGCTTCA TCCCGGGAGG GCGTTCCCCA CGGCTGGGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss149124647	ENSMUSSNP1973366	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss321654895	CHEV_5_115879273	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs52055264					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115567323 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16370	CpG island 16370	within coordinates
Gm43231	predicted gene 43231	within coordinates
Msi1	musashi RNA-binding protein 1	411 bp upstream
Rr618242	regulatory region 618242	within coordinates
Rr618243	regulatory region 618243	230 bp proximal
Tssr48228	transcription start site region 48228	241 bp upstream
Tssr48229	transcription start site region 48229	258 bp upstream
Tssr48230	transcription start site region 48230	285 bp upstream
Tssr48231	transcription start site region 48231	321 bp upstream
Tssr48232	transcription start site region 48232	358 bp upstream
Tssr48233	transcription start site region 48233	432 bp upstream
Tssr48234	transcription start site region 48234	456 bp upstream
Tssr48235	transcription start site region 48235	495 bp upstream
Tssr48236	transcription start site region 48236	680 bp upstream
Tssr48237	transcription start site region 48237	1053 bp upstream
Tssr48238	transcription start site region 48238	1316 bp upstream
Tssr52797	transcription start site region 52797	231 bp downstream