rs52055542 SNP Detail

Summary

• ID
  rs52055542
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:33787505 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCGGACTGTA GACAAGGATG GCTTCGAACT CCTAGAGATC
  CTTCTGCCTC TGTCTTCCGA GCCCTGGAAT TAAAGACAGG CGCCACCAAT GCCCAGCTTC
  Y
  CCTGTCCTTT GCTGGTAATG TGCCTTTGGG CAGGACCCTT CCCTTTGGGA GTCTCATTTC
  TGGACCTACC GTGTGACTGG AAGGCACTTT TGTGCATTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148213867	ENSMUSSNP2118007	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52055542					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:33787505 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15737	CpG island 15737	within coordinates
Fam53a	family with sequence similarity 53, member A	526 bp upstream
Gm9903	predicted gene 9903	Noncoding-Transcript-Variant
Rr399034	regulatory region 399034	222 bp downstream
Rr609574	regulatory region 609574	1887 bp distal
Rr609575	regulatory region 609575	1260 bp distal
Rr609576	regulatory region 609576	759 bp distal
Rr609577	regulatory region 609577	226 bp distal
Rr609578	regulatory region 609578	within coordinates
Tssr45824	transcription start site region 45824	231 bp downstream
Tssr45825	transcription start site region 45825	197 bp downstream
Tssr50608	transcription start site region 50608	617 bp upstream
Tssr50609	transcription start site region 50609	512 bp upstream