rs52055865 SNP Detail

Summary

• ID
  rs52055865
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:30330177 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGATTCTTC ACTACAGTCT
  CAAGAGGGAA AGGCCTAAGC CTCTGTCAGG ACCTAGACCC AGTGATATTT CCTCAGGGAG
  AGCACTGGCC AGGAGGCTCC CGTGTCCCTG CCTAACTGGC TAAGAGTTGG AGCAGTCCTA
  TGTGGTCCCC TCTTCTATCT CGGCTCCTTC ACTTCTCATT AAGGCTGACC AGTGCTTCCA
  R
  TGGTCACTGC GTCTTTTTAG AAAGGCATTT TGGCTGCAGA AGACCACAGG ACTGTATTGG
  CTCTGGCATT CTACTGCCAA CAAGAACACT ACCACAGATG CACCTGGTCC CAGGCATGTG
  CCGCCAAGAA TATCACCACA GATGCACGTG GCCCCAGGCA TGTGCAGTCC TAGTTTCTGC
  AGGTGAGTGG GCAGACTGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52709021	NES15548873	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52055865					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52709021	NES15548873	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:30330177 () rs orientation: forward

Symbol	Name	Function Class
Gm62449	predicted gene, 62449	within coordinates
Prkcd	protein kinase C, delta	within coordinates
Rr292184	regulatory region 292184	376 bp distal
Rr292185	regulatory region 292185	within coordinates
Rr404042	regulatory region 404042	170 bp downstream
Tssr4363	transcription start site region 4363	446 bp upstream
Tssr124839	transcription start site region 124839	297 bp downstream
Tssr127872	transcription start site region 127872	1507 bp upstream
Tssr127873	transcription start site region 127873	416 bp upstream
Tssr127874	transcription start site region 127874	399 bp upstream
Tssr127875	transcription start site region 127875	396 bp upstream
Tssr127876	transcription start site region 127876	925 bp downstream