rs52055942 SNP Detail

Summary

• ID
  rs52055942
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:93613418 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGTAAATAT CATTTAACCC TCCAACCCCC ATGGTTCTCA
  TTCAGCAACT CTCTTCAGAT GTAAAATGGT ATGCTGATGG ACACAGGCAG TGAAATAATC
  K
  ACAGATATTT CCCAGGTGCT GCCTCAAACC AATAAAAGCA TGCCTCAGGT AGAAAGAGCA
  GTCAGTGTCT TCCATGGGTG CTGGCCTGTC ACTGCAGAG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145617917	ENSMUSSNP2498366	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
ss322805340	CHEV_8_95410689	CHEVERUD	SCREENING_POP	f	SNP			G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52055942					SNP	G	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:93613418 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lpcat2	lysophosphatidylcholine acyltransferase 2			Intron
				Noncoding-Transcript-Variant
Tssr78766	transcription start site region 78766			911 bp downstream
Tssr78767	transcription start site region 78767			610 bp upstream
Tssr78768	transcription start site region 78768			659 bp upstream