rs52056739 SNP Detail

Summary

• ID
  rs52056739
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81330075 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGATAGGG ACCTGCAGCC
  CACAGACATG GCTATCACGT GGACACACGG GTCCAGCTGA GGCCCAGCCC CCATGTTCCA
  GGACTGCAGA ATCTAAGGGA GCTAGGTGAG GGAGGGCCTG CCGGGAACAA CTTCCCTGGA
  AGCCAGCAAG GGCCAAGCAC CTCCTGGCAG ACACCTGACT CCCATCAGGG AGAGGCAACA
  Y
  CTCTCCCTCT TCAACCTGTC CCTGGTTTCT CAGGGTGGCT TGGACAGCAG CTCTCCCTTT
  GGGTCCCTAC AGTGCTTTCT GGAAATCCTG TAGGCCACGT GGCAGGACGG TACTCTGTAC
  CCAGCTTTGC TGTCTGTGAG GAGTGACAGA GCCCCAGTGG GCAGTATTGG CTAGCACCAG
  TCCCCAGGAC TCCCAAACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61292432	NES16908862	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs52056739					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61292432	NES16908862	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81330075 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1993	CpG island 1993	1259 bp proximal
Ncln	nicalin	within coordinates
Rr435684	regulatory region 435684	within coordinates
Rr435685	regulatory region 435685	393 bp distal