rs52057016 SNP Detail

Summary

• ID
  rs52057016
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:34485749 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGCTCTCT CTTGCAGCTC
  TACACTCTCT GTCCTGCCTG TTTAGTGTCT TAATTATGAT GTGATAGAAA GGTTTCTTTT
  CTGGTCTTGC CCTTTTGGAG TTCTGAGGGC CTCTTGGATC TCTTTTTGCA CCTCTTCATC
  TAGAGTTGGG AAATTTAAAA GTATCTCCTT TCTGAATTCA TTTGGCATGA AATTCCCCTC
  R
  TATGCCCATA ATTTTGGCCT TTGCATAATG CCCCAAAGGT CTTGCACGTT TTATTCACAC
  ACACTTACAT GCATCATTGG CCTTGACTGA GTGATGCGGT TCTGCCTTGC TCTGAAGCCC
  CGCCTCCTCT CCTGTATGCA ATCCTCTCTA TTCTGGGGCT TCTTCCCACT GAGCTTCTAC
  CTGACCTGCA CTTTTCGCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss148888955	ENSMUSSNP2861421	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs52057016					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:34485749 () rs orientation: forward

Symbol	Name	Function Class
D1Ertd448e	DNA segment, Chr 1, ERATO Doi 448, expressed	within coordinates
Gm28306	predicted gene 28306	1938 bp upstream
Imp4	IMP4, U3 small nucleolar ribonucleoprotein	within coordinates
Tssr6217	transcription start site region 6217	1764 bp downstream
Tssr6218	transcription start site region 6218	363 bp upstream