rs52057031 SNP Detail

Summary

• ID
  rs52057031
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:152732497 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGATGCCAG GTAGCAGGAC
  AGAGGGTAGG TGGCTTCCCC TCAGCAGTAG CGCGCAGTCC TCCATGTCAC CAGCCAGCAG
  GGTCCTTGTA ACAGTCTGCT CTTGTCTCCA TAGCTTATCA TGTCCAGAGT CGCCCACAGT
  TTGCTGCAGA TCTGTTGCTC ACTGTGCAGT TTGAATGAGA TGTCTCCAGG TCTCTGGCAT
  Y
  GAGAACACAG TCCCCAGGGG TGGCAATGTT TGAGAGGTTT AAGAGGCATG GCCTTGTTAG
  TGGAAGCACA CCACACTGGA GAAGATCTCT GTGAGTTCAA ACACTCACAG CATTTTGAGG
  TCATTTCTCT GTGTTTCTTG CTGGGAGCTC CCAGCCACTG CGTCTGCTCT GCCATGGTGG
  ACTCTCATCC CTCTGGGACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148084594	ENSMUSSNP6839034	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss321435527	CHEV_4_152022149	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52057031					SNP	T	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152732497 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15417	CpG island 15417	804 bp distal
Gm69406	predicted gene, 69406	within coordinates
Rr87959	regulatory region 87959	within coordinates
Rr93365	regulatory region 93365	497 bp distal
Rr97434	regulatory region 97434	within coordinates