rs52058325 SNP Detail

Summary

• ID
  rs52058325
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:20772966 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAAGAACA CAAAGCCTTG
  CTGCTGTGTA TGTTCTGTAC AAAAACTGTT TTTAGAGATA TGTTAAGAAC CCATTGTCAA
  AAGCCAAAGA ACTTGAAATT AGCCTAGGAT GTGGAGGCAG GACTAAAATT TTGAGGTTAG
  CTTGAACTAC ACAGAAACAT CTGGACAGTG GTGGGGGGAG GGGGAAGGAG AAGGTAGGGA
  R
  ATGAACTGCA TCCTAAAGGA GAGTGGATAA AATATGCCAC TGTATAATAT ATATATATAT
  ACCCTTACAG TGGAACACTG CTCATCAATG TAAGGGGAAA CAGTTGAAGC AGTACGAATG
  TAGCTAAACA CTTGCAAAAT CAAAGACGCC AACTCTAAGA CATTATGGGG TGAATGAATG
  AAGTGACTCT GTCATTTACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	MSM/Ms
ss131781671	ENSMUSSNP5714434	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	MSM/Ms
rs52058325					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:20772966 () rs orientation: forward

Symbol	Name	Function Class
Gm32213	predicted gene, 32213	1804 bp downstream
Lgalsl	galectin like	610 bp downstream
Rr443482	regulatory region 443482	403 bp proximal