rs52058603 SNP Detail

Summary

• ID
  rs52058603
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:49590849 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCCCTGGT TGTCCTCATG
  GCTAACCCCC ACCTGAAAAC CTCAGCACCC CTTCATTTAG GGTTTTCTTC TTTTCTTTTC
  TTTTCTTTTC TTTTCTTTTC CTTTTCTTTT CTCTTCTCTT CTTTTCTTTC TTTCTTTTTT
  TTTTTTGAGG GATTTCATCA TGTAGCCATG AAAACCTCAA AGTTCTAGGA AACTGCAAAC
  Y
  ATTTGGAAAC TCTGTGCCAA CCGTTACAGC CAAAGGTCAG ACTTATTTCT TCCTATGTCA
  CAATTTCTCG GCTAAGAATT TCCTGTGTGG CTTTTGAGTC ACCGTTCATC CTGGGTTTTC
  TCCGGTAAGG TGATAGAGTT ATATTTTCCC TCCTGTCCAG TCGCTTTTCT TTTACCTTCT
  GTAAAATCTT CTGCAGGGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60460818	NES16446446	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	T	T	T	T	T	T	T	T	T	T
ss148122734	ENSMUSSNP1777557	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52058603					SNP	C	C	T	T	T	C	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60460818	NES16446446	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:49590849 () rs orientation: forward

Symbol	Name	Function Class
Gm15518	predicted gene 15518	within coordinates
Rr516710	regulatory region 516710	1678 bp distal
Rr516711	regulatory region 516711	134 bp distal
Rr516712	regulatory region 516712	854 bp proximal
Rr516713	regulatory region 516713	1931 bp proximal
Tssr138713	transcription start site region 138713	126 bp upstream
Tssr141324	transcription start site region 141324	1777 bp upstream
Tssr141325	transcription start site region 141325	1748 bp upstream
Tssr141326	transcription start site region 141326	1707 bp upstream
Tssr141327	transcription start site region 141327	1684 bp upstream
Tssr141328	transcription start site region 141328	664 bp upstream
Tssr141329	transcription start site region 141329	304 bp downstream
Tssr141330	transcription start site region 141330	319 bp downstream
Tssr141331	transcription start site region 141331	332 bp downstream
Tssr141332	transcription start site region 141332	360 bp downstream
Tssr141333	transcription start site region 141333	1195 bp downstream
Tssr141334	transcription start site region 141334	1350 bp downstream